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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA03G27320.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | B3 | ||||||||
Protein Properties | Length: 901aa MW: 104043 Da PI: 9.8707 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 66.1 | 5e-21 | 24 | 113 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 ffkv+ +++ ++++p kfae++ + + t++l+ ++g++ +v + +k+s++ vltkGW eF++++++k gDf+vF+++g+s+f v ONIVA03G27320.2 24 FFKVM--IGGFRR-QMTIPYKFAENFRDQ--IQGTIKLKARNGNTCSVLV--DKCSNKLVLTKGWAEFANSHDIKMGDFLVFRYTGNSQF--EV 108 56666..445555.6********888655..4459***************..**************************************..99 PP EEE-S CS B3 95 kvfrk 99 k+f+ ONIVA03G27320.2 109 KIFDP 113 99986 PP | |||||||
2 | B3 | 35.2 | 2.1e-11 | 212 | 284 | 1 | 76 |
EEEE-..-HHHHT.T-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS B3 1 ffkvltpsdvlks.grlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76 f+ v+++s+v+++ + + +++k+a+e+ gg+ ++lt +++g++W+vk++++k++ r +l+kGW++F ++n+L+ ONIVA03G27320.2 212 FVAVMKKSNVTRQpCYVAISRKYANEYfpGGD----QMLT-LQRHGKRWQVKFCISKRKLR-MLSKGWRKFTRDNELQK 284 77889999999999999**********76555....3455.667*********77666666.89*************86 PP | |||||||
3 | B3 | 65.5 | 7.8e-21 | 310 | 391 | 12 | 99 |
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 ++r+++p kfa++++g+ skt++le ++g +++v++ +kk + vl++GW++Fv+a++L+ gDf+vFk++g +f l v +f+ ONIVA03G27320.2 310 FHKRMTIPDKFARHFKGV--ISKTIKLEPRNGYTFDVQV--TKKLNILVLGSGWESFVNAHDLNMGDFLVFKYNG--DFLLQVLIFDP 391 4568********999999..899****************..*******************************976..88889999985 PP | |||||||
4 | B3 | 40.6 | 4.6e-13 | 523 | 573 | 34 | 86 |
SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 34 ktltledesgrsWevkl.iyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 ++l+l++ + +sW+v++ ++++ks++ lt+GWk+Fv++n L+ gD ++F+ + ONIVA03G27320.2 523 QELMLRH-RDKSWKVRFyRFNNKSRK--LTQGWKRFVHDNYLRMGDLCLFEILK 573 5677766.78******9455777777..9**********************655 PP | |||||||
5 | B3 | 57.5 | 2.6e-18 | 607 | 693 | 2 | 97 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 fkv+ ++ r+++p++f++ + gk ++t++l+ ++g +++v++ +k+ g++ l++GWk Fv a++L+ gDf+vF++dg s+ +v ONIVA03G27320.2 607 FKVM--IGRFR-ERMIIPNEFLQYFRGK--IPRTIKLQLRDGCTYDVQV--TKNLGKISLQSGWKAFVTAHDLQMGDFLVFSYDGISKL--KVL 691 5555..44444.57********555666..66789999999********..********************************986555..777 PP EE CS B3 96 vf 97 +f ONIVA03G27320.2 692 IF 693 77 PP | |||||||
6 | B3 | 47.6 | 3.1e-15 | 817 | 900 | 12 | 99 |
HTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 12 ksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 ks+ + + +++a+ + ke + +t +++g+ Wev ++ +k ++ l++GW++F+++n+L++gD+++F+l +++e +++v+++ k ONIVA03G27320.2 817 KSQTVDICREYADVYlP-FKELN--MT-LQRHGKNWEVLCR-TKDTRTKRLSTGWSRFAQENNLQVGDICLFELLKKKEYSMNVHIIPK 900 56667777888877742.22333..44.348*********4.44444478***********************9999999999999865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 6.47E-25 | 18 | 116 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.5E-24 | 18 | 116 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.59 | 21 | 114 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.64E-20 | 23 | 112 | No hit | No description |
Pfam | PF02362 | 5.6E-19 | 24 | 112 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.5E-13 | 24 | 114 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.3E-24 | 200 | 283 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.88E-15 | 205 | 283 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.33E-13 | 210 | 283 | No hit | No description |
Pfam | PF02362 | 1.2E-9 | 212 | 283 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.04 | 212 | 294 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 8.445 | 213 | 283 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.7E-25 | 294 | 405 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.12E-23 | 296 | 394 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.929 | 299 | 392 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.42E-20 | 300 | 390 | No hit | No description |
Pfam | PF02362 | 1.5E-18 | 302 | 390 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.1E-11 | 302 | 392 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.0E-17 | 482 | 575 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.53E-15 | 483 | 575 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.60E-10 | 493 | 570 | No hit | No description |
SMART | SM01019 | 1.5E-4 | 494 | 584 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.6E-10 | 522 | 574 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.251 | 524 | 584 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 5.69E-22 | 599 | 698 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.704 | 603 | 696 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.8E-16 | 606 | 693 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.0E-12 | 606 | 696 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 6.77E-21 | 606 | 693 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 3.8E-21 | 616 | 704 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-20 | 799 | 898 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.05E-18 | 800 | 898 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.266 | 806 | 901 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.83E-13 | 808 | 899 | No hit | No description |
SMART | SM01019 | 5.6E-8 | 809 | 901 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.2E-13 | 816 | 900 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0010048 | Biological Process | vernalization response | ||||
GO:0005654 | Cellular Component | nucleoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 901 aa Download sequence Send to blast |
MSKSGCERCR GRGFWDTDDQ DTYFFKVMIG GFRRQMTIPY KFAENFRDQI QGTIKLKARN 60 GNTCSVLVDK CSNKLVLTKG WAEFANSHDI KMGDFLVFRY TGNSQFEVKI FDPSGCVKAA 120 SHNAVNIGQH AQNMQGDPIE ILSCSDEHLR AQSLTTERQN QPEKDVIDNC NKKMKTEHAS 180 SSEDDQETPT AEVHRMKVEE MVRAIHSNHP VFVAVMKKSN VTRQPCYVAI SRKYANEYFP 240 GGDQMLTLQR HGKRWQVKFC ISKRKLRMLS KGWRKFTRDN ELQKMRKLNT RSTARDDQEK 300 YFFKVMIGDF HKRMTIPDKF ARHFKGVISK TIKLEPRNGY TFDVQVTKKL NILVLGSGWE 360 SFVNAHDLNM GDFLVFKYNG DFLLQVLIFD PSGCEKSTSC SMENAIDHVG QGWKEHNDIS 420 TSYHDQPKGN KHWMQKDSSS KGNKIGNTRS SNTPSNFSGC ILPRGTCLPV VQEKKMKEKI 480 QAIHSKTPMY GNVMTKCNVS GSPCVLEITQ LYDDAYLPFN NGQELMLRHR DKSWKVRFYR 540 FNNKSRKLTQ GWKRFVHDNY LRMGDLCLFE ILKNKYTMNM RRPGARCREG HAHFNGNHID 600 GQYKNFFKVM IGRFRERMII PNEFLQYFRG KIPRTIKLQL RDGCTYDVQV TKNLGKISLQ 660 SGWKAFVTAH DLQMGDFLVF SYDGISKLKV LIFGPSGCEK VHSRPTLKNA THCGEKWEEP 720 LHISSNSHDL PVKSPQNVSK SEKQWDSSEQ ENDTANIEEV ALQGDDLQGH PVLNCILPKH 780 TRLTDMQKQQ LESKVGAIHS EIPIYGCILR KSRVHGKSQT VDICREYADV YLPFKELNMT 840 LQRHGKNWEV LCRTKDTRTK RLSTGWSRFA QENNLQVGDI CLFELLKKKE YSMNVHIIPK 900 K |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012611 | 0.0 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015628067.1 | 0.0 | PREDICTED: putative B3 domain-containing protein Os03g0621600 | ||||
Swissprot | Q851V5 | 0.0 | Y3216_ORYSJ; Putative B3 domain-containing protein Os03g0621600 | ||||
TrEMBL | A0A0E0GQL2 | 0.0 | A0A0E0GQL2_ORYNI; Uncharacterized protein | ||||
STRING | ORGLA03G0244700.1 | 0.0 | (Oryza glaberrima) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 4e-23 | B3 family protein |