PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G27320.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 901aa    MW: 104043 Da    PI: 9.8707
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G27320.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B366.15e-2124113199
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      ffkv+     +++ ++++p kfae++  +   + t++l+ ++g++ +v +  +k+s++ vltkGW eF++++++k gDf+vF+++g+s+f   v
  ONIVA03G27320.2  24 FFKVM--IGGFRR-QMTIPYKFAENFRDQ--IQGTIKLKARNGNTCSVLV--DKCSNKLVLTKGWAEFANSHDIKMGDFLVFRYTGNSQF--EV 108
                      56666..445555.6********888655..4459***************..**************************************..99 PP

                      EEE-S CS
               B3  95 kvfrk 99 
                      k+f+ 
  ONIVA03G27320.2 109 KIFDP 113
                      99986 PP

2B335.22.1e-11212284176
                      EEEE-..-HHHHT.T-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS
               B3   1 ffkvltpsdvlks.grlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76 
                      f+ v+++s+v+++ + + +++k+a+e+  gg+    ++lt  +++g++W+vk++++k++ r +l+kGW++F ++n+L+ 
  ONIVA03G27320.2 212 FVAVMKKSNVTRQpCYVAISRKYANEYfpGGD----QMLT-LQRHGKRWQVKFCISKRKLR-MLSKGWRKFTRDNELQK 284
                      77889999999999999**********76555....3455.667*********77666666.89*************86 PP

3B365.57.8e-213103911299
                      HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                       ++r+++p kfa++++g+   skt++le ++g +++v++  +kk +  vl++GW++Fv+a++L+ gDf+vFk++g  +f l v +f+ 
  ONIVA03G27320.2 310 FHKRMTIPDKFARHFKGV--ISKTIKLEPRNGYTFDVQV--TKKLNILVLGSGWESFVNAHDLNMGDFLVFKYNG--DFLLQVLIFDP 391
                      4568********999999..899****************..*******************************976..88889999985 PP

4B340.64.6e-135235733486
                      SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
               B3  34 ktltledesgrsWevkl.iyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                      ++l+l++ + +sW+v++ ++++ks++  lt+GWk+Fv++n L+ gD ++F+  +
  ONIVA03G27320.2 523 QELMLRH-RDKSWKVRFyRFNNKSRK--LTQGWKRFVHDNYLRMGDLCLFEILK 573
                      5677766.78******9455777777..9**********************655 PP

5B357.52.6e-18607693297
                      EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
               B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                      fkv+     ++  r+++p++f++ + gk   ++t++l+ ++g +++v++  +k+ g++ l++GWk Fv a++L+ gDf+vF++dg s+   +v 
  ONIVA03G27320.2 607 FKVM--IGRFR-ERMIIPNEFLQYFRGK--IPRTIKLQLRDGCTYDVQV--TKNLGKISLQSGWKAFVTAHDLQMGDFLVFSYDGISKL--KVL 691
                      5555..44444.57********555666..66789999999********..********************************986555..777 PP

                      EE CS
               B3  96 vf 97 
                      +f
  ONIVA03G27320.2 692 IF 693
                      77 PP

6B347.63.1e-158179001299
                      HTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  12 ksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      ks+ + + +++a+ +    ke +  +t  +++g+ Wev ++ +k  ++  l++GW++F+++n+L++gD+++F+l +++e +++v+++ k
  ONIVA03G27320.2 817 KSQTVDICREYADVYlP-FKELN--MT-LQRHGKNWEVLCR-TKDTRTKRLSTGWSRFAQENNLQVGDICLFELLKKKEYSMNVHIIPK 900
                      56667777888877742.22333..44.348*********4.44444478***********************9999999999999865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.47E-2518116IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.5E-2418116IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.5921114IPR003340B3 DNA binding domain
CDDcd100171.64E-2023112No hitNo description
PfamPF023625.6E-1924112IPR003340B3 DNA binding domain
SMARTSM010191.5E-1324114IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.3E-24200283IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.88E-15205283IPR015300DNA-binding pseudobarrel domain
CDDcd100176.33E-13210283No hitNo description
PfamPF023621.2E-9212283IPR003340B3 DNA binding domain
SMARTSM010190.04212294IPR003340B3 DNA binding domain
PROSITE profilePS508638.445213283IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.7E-25294405IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.12E-23296394IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.929299392IPR003340B3 DNA binding domain
CDDcd100171.42E-20300390No hitNo description
PfamPF023621.5E-18302390IPR003340B3 DNA binding domain
SMARTSM010191.1E-11302392IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.0E-17482575IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-15483575IPR015300DNA-binding pseudobarrel domain
CDDcd100171.60E-10493570No hitNo description
SMARTSM010191.5E-4494584IPR003340B3 DNA binding domain
PfamPF023622.6E-10522574IPR003340B3 DNA binding domain
PROSITE profilePS5086311.251524584IPR003340B3 DNA binding domain
SuperFamilySSF1019365.69E-22599698IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.704603696IPR003340B3 DNA binding domain
PfamPF023623.8E-16606693IPR003340B3 DNA binding domain
SMARTSM010193.0E-12606696IPR003340B3 DNA binding domain
CDDcd100176.77E-21606693No hitNo description
Gene3DG3DSA:2.40.330.103.8E-21616704IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-20799898IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.05E-18800898IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.266806901IPR003340B3 DNA binding domain
CDDcd100172.83E-13808899No hitNo description
SMARTSM010195.6E-8809901IPR003340B3 DNA binding domain
PfamPF023621.2E-13816900IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0010048Biological Processvernalization response
GO:0005654Cellular Componentnucleoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 901 aa     Download sequence    Send to blast
MSKSGCERCR GRGFWDTDDQ DTYFFKVMIG GFRRQMTIPY KFAENFRDQI QGTIKLKARN  60
GNTCSVLVDK CSNKLVLTKG WAEFANSHDI KMGDFLVFRY TGNSQFEVKI FDPSGCVKAA  120
SHNAVNIGQH AQNMQGDPIE ILSCSDEHLR AQSLTTERQN QPEKDVIDNC NKKMKTEHAS  180
SSEDDQETPT AEVHRMKVEE MVRAIHSNHP VFVAVMKKSN VTRQPCYVAI SRKYANEYFP  240
GGDQMLTLQR HGKRWQVKFC ISKRKLRMLS KGWRKFTRDN ELQKMRKLNT RSTARDDQEK  300
YFFKVMIGDF HKRMTIPDKF ARHFKGVISK TIKLEPRNGY TFDVQVTKKL NILVLGSGWE  360
SFVNAHDLNM GDFLVFKYNG DFLLQVLIFD PSGCEKSTSC SMENAIDHVG QGWKEHNDIS  420
TSYHDQPKGN KHWMQKDSSS KGNKIGNTRS SNTPSNFSGC ILPRGTCLPV VQEKKMKEKI  480
QAIHSKTPMY GNVMTKCNVS GSPCVLEITQ LYDDAYLPFN NGQELMLRHR DKSWKVRFYR  540
FNNKSRKLTQ GWKRFVHDNY LRMGDLCLFE ILKNKYTMNM RRPGARCREG HAHFNGNHID  600
GQYKNFFKVM IGRFRERMII PNEFLQYFRG KIPRTIKLQL RDGCTYDVQV TKNLGKISLQ  660
SGWKAFVTAH DLQMGDFLVF SYDGISKLKV LIFGPSGCEK VHSRPTLKNA THCGEKWEEP  720
LHISSNSHDL PVKSPQNVSK SEKQWDSSEQ ENDTANIEEV ALQGDDLQGH PVLNCILPKH  780
TRLTDMQKQQ LESKVGAIHS EIPIYGCILR KSRVHGKSQT VDICREYADV YLPFKELNMT  840
LQRHGKNWEV LCRTKDTRTK RLSTGWSRFA QENNLQVGDI CLFELLKKKE YSMNVHIIPK  900
K
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628067.10.0PREDICTED: putative B3 domain-containing protein Os03g0621600
SwissprotQ851V50.0Y3216_ORYSJ; Putative B3 domain-containing protein Os03g0621600
TrEMBLA0A0E0GQL20.0A0A0E0GQL2_ORYNI; Uncharacterized protein
STRINGORGLA03G0244700.10.0(Oryza glaberrima)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.14e-23B3 family protein